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Publications for Denise Akob

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2017Akob, D. M., Baesman, S.M., Sutton, J.M., Fierst, J.L., Mumford, A.C., Shrestha, Y., Poret-Peterson, A.T., Bennett, S., Dunlap, D.S., Haase, K.B., Oremland, R.S., 2017, Detection of Diazotrophy in the Acetylene-Fermenting Anaerobe, Pelobacter strain SFB93. Applied and Environmental Microbiology, in press.
2017Cozzarelli, I.M., Skalak, K.J., Kent, D.B., Engle, M.A., Benthem, A., Mumford, A.C., Haase, K., Farag, A., Harper, D., Nagel, S.C., Iwanowicz, L.R., Orem, W.H., Akob, D.M., Jaeschke, J.B., Galloway, J., Kohler, M., Stoliker, D.L., Jolly, G.D., 2017, Environmental signatures and effects of an oil and gas wastewater spill in the Williston Basin, North Dakota, Science of The Total Environment, v. 579, p. 1781-1793. [get publication]
2017Ouyang, B., D. M. Akob, D. S. Dunlap, and D. Renock. 2017. Microbially mediated barite dissolution in anoxic brines. Applied Geochemistry, 76: 51-59. [get publication]
2017Sutton JM, Baesman SM, Fierst JL, Poret-Peterson AT, Oremland RS, Dunlap DS, Akob DM. 2017. Complete genome sequence of the acetylene-fermenting Pelobacter sp. strain SFB93. Genome Announc 5:e01573-16. [get publication]
2017Sutton JM, Baesman SM, Fierst JL, Poret-Peterson AT, Oremland RS, Dunlap DS, Akob DM. 2017. Complete genome sequences of two acetylene-fermenting Pelobacter acetylenicusstrains. Genome Announc 5:e01572-16. [get publication]
2016Akob, D.M., A. Mumford, W. H. Orem, M. Engle, J.G. Klinges, D. B. Kent and I. M. Cozzarelli. 2016. Wastewater Disposal from Unconventional Oil and Gas Development Degrades Stream Quality at a West Virginia Injection Facility. Environmental Science and Technology, 50 (11): 5517–5525. [get publication]
2016Bohu, T., D.M. Akob, M. Abratis, C.S. Lazar, and K. Küsel. 2016. Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater. Applied and Environmental Microbiology (82) 3009-3021. [get publication]
2016Fabisch, M., G. Freyer, C.A. Johnson, G. Buchel, D.M. Akob, T.R. Neu, and K. Kusel. 2016. Dominance of 'Gallionella capsiferriformans' and heavy metal association with Gallionella-like stalks in metal-rich pH 6 mine water discharge. Geobiology (14) 68-90. [get publication]
2016Fahrenfeld, N.L., Reyes, H.D., Eramo, A., Akob, D.M., Mumford, A.C., Cozzarelli, I.M., 2016, Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics, Science of The Total Environment, in press. [get publication]
2016Kassotis, C.D., L.R. Iwanowicz, D.M. Akob, I.M. Cozzarelli, A.C. Mumford, W.H. Orem, and S.C. Nagel. 2016. Endocrine Disrupting Activities of Surface Water Associated with a West Virginia Oil and Gas Industry Wastewater Disposal Site. Science of the Total Environment, 557–558: 901–910. [get publication]
2016Shelton, J. L., D. M. Akob, J. C. McIntosh, N. Fierer, J. R. Spear, P. D. Warwick, J. E. McCray. Environmental Drivers of Differences in Microbial Community Structure in Crude Oil Reservoirs across a Methanogenic Gradient. Frontiers in Microbiology, 7(1535). [get publication]
2015Akob, D. M., I. M. Cozzarelli, D. S. Dunlap, E. L. Rowan and M. M. Lorah. 2015. Organic and Inorganic Composition and Microbiology of Produced Waters from Pennsylvania Shale Gas Wells. Applied Geochemistry, 60:116-125 (IP-061928). 
2015Beulig, F., V. B. Heuer, D. M. Akob, B. Viehweger, M. Elvert, M. Herrmann, K.-U. Hinrichs, and K. Küsel. 2015. Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette. The ISME Journal 9(3): 746-59.
2015Bohu, T., C. Santelli, D. M. Akob, T. R. Neu, V. Ciobota, P. Rösch, J. Popp, S. Nietzsche, and K. Küsel. 2015. Characterization of pH dependent Mn(II) oxidation strategies and acidic pH bixbyite formation by Mesorhizobium australicum T-G1. Frontiers in Microbiology, 6: e734.
2015Fabisch, M., G. Freyer, C. A. Johnson, G. Büchel, D. Akob, and K. Küsel. Dominance of ‘Gallionella capsiferriformans’ and heavy metal retention by stalk-forming iron oxidizers in metal-rich groundwater discharge. Geobiology, accepted 28 August 2015 (GBI-023-2015) (IP-066911).
2015Herrmann. M., A. Rusznyák, D. M. Akob, I. Schulze, S. Opitz, K.-U. Totsche, and K. Küsel. 2015. Large fractions of CO2-fixing microorganisms in pristine limestone aquifers appear to be involved in the oxidation of reduced sulfur and nitrogen compounds. Applied and Environmental Microbiology, 81(7): 2384-2394.
2015Ritter, D., J. C. McIntosh, D. Vinson, E. Barnhart, D. M. Akob, M. Fields, A. Cunningham, W. Orem. 2015. Enhanced Microbial Coalbed Methane Generation: A Review of Potential and Limitations. International Journal of Coal Geology, 146: 28–41.
2014Akob, D. M., T. Bo Hu, A. Beyer, F. Schäffner, M. Händel, D. Merten, G. Büchel, K.-U. Totsche, and K. Küsel. 2014. Identification of Mn(II)-oxidizing bacteria from a low pH contaminated former uranium mine. Applied and Environmental Microbiology, 80(16): 5086-5097.
2013Fabisch M, Beulig F, Akob DM and Küsel K, 2013. Surprising abundance of Gallionella-related iron oxidizers in creek sediments at pH 4.4 or at high heavy metal concentrations. Front. Microbiol. 4:390. doi: 10.3389/fmicb.2013.00390
2013Keiner, R., A. Rusznyak, D. M. Akob, S. Hanf, K. Küsel, J. Popp, and T. Frosch. 2013. Raman spectroscopy – an innovative and versatile tool to follow the respirational activity and carbonate biomineralization of important cave bacteria. Analytical Chemistry, 85(18): 8708–8714.
2013Risse-Buhl, U., M. Herrmann, D. M. Akob, P. Geesink, N. Pizani, W. Schönborn, K.-U. Totsche and K. Küsel. 2013. Phagotrophic protist diversity in the groundwater of a karstified aquifer - morphological and molecular analysis. Journal of Eukaryotic Microbiology, 60(5): 467–479.
2012Akob, D. M.*, S. H. Lee*, M. Sheth, K. Küsel, D. B. Watson, A. V. Palumbo, J. E. Kostka, and K.-J.Chin. 2012. Gene expression correlates with process rates quantified for sulfate- and Fe(III)-reducing bacteria in U(VI)-contaminated sediments. Frontiers in Terrestrial Microbiology 3:280. *Equal contribution
2012Gray, S. M., D. M. Akob, S. J. Green, and J. E. Kostka. 2012. The predictability of bacterial composition within the Sarracenia purpurea model system: local scale differences and relationships with the other members of the food web. PLoS One 7(12): e50969.
2012Rusznyák, A., D. M. Akob, S. Nietzsche, K. Eusterhues, K. U. Totsche, T. R. Neu, T. Frosch, J. Popp, R. Keiner, J. Geletneky, L. Katzschmann, E.-D. Schulze, and K. Küsel. 2012. Calcite biomineralization by bacterial isolates from the recently discovered pristine karstic Herrenberg Cave. Applied and Environmental Microbiology 78(4): 1157–1167.
2011Akob, D. M. and K. Küsel. 2011. Where microorganisms meet rocks in the Earth's Critical Zone. Biogeosciences 8: 3531-3543.
2011Akob, D. M., L. Kerkhof, K. Küsel, D. B. Watson, A. V. Palumbo, and J. E. Kostka. 2011. Linking specific heterotrophic bacterial populations to bioreduction of uranium and nitrate using stable isotope probing in contaminated subsurface sediments. Applied and Environmental Microbiology 77(22): 8197–8200.
2011Burkhardt, E.-M., S. Bischoff, D. M. Akob, G. Büchel, and K. Küsel. 2011. Heavy metal tolerance of Fe(III)-reducing microbial communities in a contaminated creek bank soil. Applied and Environmental Microbiology 77(9): 3132-3136.
2010Burkhardt, E.-M., D. M. Akob, S. Bischoff, J. Sitte, J. E. Kostka, D. Banerjee, A. C. Scheinost, K. Küsel. 2010. Impact of Biostimulated Redox Processes on Metal Dynamics in an Iron-rich Creek Soil of a former Uranium Mining Area. Environmental Science & Technology 44(1): 177-183.
2010Green, S. J., O. Prakash, T. M. Gihring, D. M. Akob, P. Jasrotia, P. M. Jardine, D. B. Watson, S. D. Brown, A. V. Palumbo and J. E. Kostka. 2010. Denitrifying bacteria from the terrestrial subsurface exposed to mixed waste contamination. Applied and Environmental Microbiology 76(10): 3244–3254.
2010Lu, S., S. Gischkat, M. Reiche, D. M. Akob, K. B. Hallberg, and K. Küsel. 2010. Ecophysiology of Fe-cycling Bacteria in Acidic Sediments. Applied and Environmental Microbiology 76 (24): 8174-8183.
2010Prakash, O., T. M. Gihring, D. D. Dalton, K.-J. Chin, S. J. Green, D. M. Akob, G. Wanger, and J. E. Kostka. 2010. Geobacter daltonii sp. nov., an iron(III)- and uranium(VI)-reducing bacterium isolated from the shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination. International Journal of Systematic and Evolutionary Microbiology 60(3): 546-553.
2010Sitte, J., D. M. Akob, C. Kaufmann, K. Finster, D. Banerjee, E.-M. Burkhardt, J. E. Kostka, A. Scheinost, G. Büchel and K. Küsel. 2010. Microbial Links between Sulfate Reduction and Metal Retention in Uranium and Heavy Metal-contaminated Soil. Applied and Environmental Microbiology 76(10): 3143–3152.
2010Vishnivetskaya, T. A., C. C. Brandt, A. S. Madden, M. S. Drake, J. E. Kostka, D. M. Akob, K. Küsel, and A. V. Palumbo. 2010. Microbial Community Changes in Response to Ethanol or Methanol Amendments for U(VI) Reduction. Applied and Environmental Microbiology 76(17): 5728-5735.
2008Akob, D. M., H. J. Mills, T. M Gihring, L. Kerkhof, J. W. Stucki, A. S. Anastacío, K.-J.Chin, K. Kusel, A. V. Palumbo, D. B. Watson, and J. E. Kostka. 2008. Functional Diversity and Electron Donor Dependence of Microbial Populations Capable of U(VI) Reduction in Radionuclide-Contaminated Subsurface Sediments. Applied and Environmental Microbiology 74(10): 3159-3170.
2008Blöthe, M., D. M. Akob, K. Walter, J.E. Kostka, H. L. Drake, and K. Küsel. 2008. Heterogeneity of Fe(III)-reducing microorganisms in coal-mining lake sediments caused by a pH gradient. Applied and Environmental Microbiology 74(4): 1019–1029.
2007Akob, D. M., H. J. Mills, & J. E. Kostka. 2007. Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiology Ecology 59:95-107.
2004Diaz, M. C., D. Akob, and C. S. Cary. 2004. Denaturing gradient gel electrophoresis of nitrifying microbes associated with tropical sponges. Proceedings of the 6th International Sponge Conference, Rapallo, Italy, 2002. Bollettino dei Musei e degli Istituti biologici dell'Università di Genova 68: 279–289.