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Publications for Denise Akob

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2017Cozzarelli, I.M., Skalak, K.J., Kent, D.B., Engle, M.A., Benthem, A., Mumford, A.C., Haase, K., Farag, A., Harper, D., Nagel, S.C., Iwanowicz, L.R., Orem, W.H., Akob, D.M., Jaeschke, J.B., Galloway, J., Kohler, M., Stoliker, D.L., Jolly, G.D., 2017, Environmental signatures and effects of an oil and gas wastewater spill in the Williston Basin, North Dakota, Science of The Total Environment, v. 579, p. 1781-1793. [get publication]
2016Akob, D.M., A. Mumford, W. H. Orem, M. Engle, J.G. Klinges, D. B. Kent and I. M. Cozzarelli. 2016. Wastewater Disposal from Unconventional Oil and Gas Development Degrades Stream Quality at a West Virginia Injection Facility. Environmental Science and Technology, 50 (11): 5517–5525. [get publication]
2016Bohu, T., D.M. Akob, M. Abratis, C.S. Lazar, and K. Küsel. 2016. Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater. Applied and Environmental Microbiology (82) 3009-3021. [get publication]
2016Fabisch, M., G. Freyer, C.A. Johnson, G. Buchel, D.M. Akob, T.R. Neu, and K. Kusel. 2016. Dominance of 'Gallionella capsiferriformans' and heavy metal association with Gallionella-like stalks in metal-rich pH 6 mine water discharge. Geobiology (14) 68-90. [get publication]
2016Fahrenfeld, N.L., Reyes, H.D., Eramo, A., Akob, D.M., Mumford, A.C., Cozzarelli, I.M., 2016, Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics, Science of The Total Environment, in press. [get publication]
2016Kassotis, C.D., L.R. Iwanowicz, D.M. Akob, I.M. Cozzarelli, A.C. Mumford, W.H. Orem, and S.C. Nagel. 2016. Endocrine Disrupting Activities of Surface Water Associated with a West Virginia Oil and Gas Industry Wastewater Disposal Site. Science of the Total Environment, 557–558: 901–910. [get publication]
2016Shelton, J. L., D. M. Akob, J. C. McIntosh, N. Fierer, J. R. Spear, P. D. Warwick, J. E. McCray. Environmental Drivers of Differences in Microbial Community Structure in Crude Oil Reservoirs across a Methanogenic Gradient. Frontiers in Microbiology, 7(1535). [get publication]
2015Akob, D. M., I. M. Cozzarelli, D. S. Dunlap, E. L. Rowan and M. M. Lorah. 2015. Organic and Inorganic Composition and Microbiology of Produced Waters from Pennsylvania Shale Gas Wells. Applied Geochemistry, 60:116-125 (IP-061928). 
2015Beulig, F., V. B. Heuer, D. M. Akob, B. Viehweger, M. Elvert, M. Herrmann, K.-U. Hinrichs, and K. Küsel. 2015. Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette. The ISME Journal 9(3): 746-59.
2015Bohu, T., C. Santelli, D. M. Akob, T. R. Neu, V. Ciobota, P. Rösch, J. Popp, S. Nietzsche, and K. Küsel. 2015. Characterization of pH dependent Mn(II) oxidation strategies and acidic pH bixbyite formation by Mesorhizobium australicum T-G1. Frontiers in Microbiology, 6: e734.
2015Fabisch, M., G. Freyer, C. A. Johnson, G. Büchel, D. Akob, and K. Küsel. Dominance of ‘Gallionella capsiferriformans’ and heavy metal retention by stalk-forming iron oxidizers in metal-rich groundwater discharge. Geobiology, accepted 28 August 2015 (GBI-023-2015) (IP-066911).
2015Herrmann. M., A. Rusznyák, D. M. Akob, I. Schulze, S. Opitz, K.-U. Totsche, and K. Küsel. 2015. Large fractions of CO2-fixing microorganisms in pristine limestone aquifers appear to be involved in the oxidation of reduced sulfur and nitrogen compounds. Applied and Environmental Microbiology, 81(7): 2384-2394.
2015Ritter, D., J. C. McIntosh, D. Vinson, E. Barnhart, D. M. Akob, M. Fields, A. Cunningham, W. Orem. 2015. Enhanced Microbial Coalbed Methane Generation: A Review of Potential and Limitations. International Journal of Coal Geology, 146: 28–41.
2014Akob, D. M., T. Bo Hu, A. Beyer, F. Schäffner, M. Händel, D. Merten, G. Büchel, K.-U. Totsche, and K. Küsel. 2014. Identification of Mn(II)-oxidizing bacteria from a low pH contaminated former uranium mine. Applied and Environmental Microbiology, 80(16): 5086-5097.
2013Fabisch M, Beulig F, Akob DM and Küsel K, 2013. Surprising abundance of Gallionella-related iron oxidizers in creek sediments at pH 4.4 or at high heavy metal concentrations. Front. Microbiol. 4:390. doi: 10.3389/fmicb.2013.00390
2013Keiner, R., A. Rusznyak, D. M. Akob, S. Hanf, K. Küsel, J. Popp, and T. Frosch. 2013. Raman spectroscopy – an innovative and versatile tool to follow the respirational activity and carbonate biomineralization of important cave bacteria. Analytical Chemistry, 85(18): 8708–8714.
2013Risse-Buhl, U., M. Herrmann, D. M. Akob, P. Geesink, N. Pizani, W. Schönborn, K.-U. Totsche and K. Küsel. 2013. Phagotrophic protist diversity in the groundwater of a karstified aquifer - morphological and molecular analysis. Journal of Eukaryotic Microbiology, 60(5): 467–479.
2012Akob, D. M.*, S. H. Lee*, M. Sheth, K. Küsel, D. B. Watson, A. V. Palumbo, J. E. Kostka, and K.-J.Chin. 2012. Gene expression correlates with process rates quantified for sulfate- and Fe(III)-reducing bacteria in U(VI)-contaminated sediments. Frontiers in Terrestrial Microbiology 3:280. *Equal contribution
2012Gray, S. M., D. M. Akob, S. J. Green, and J. E. Kostka. 2012. The predictability of bacterial composition within the Sarracenia purpurea model system: local scale differences and relationships with the other members of the food web. PLoS One 7(12): e50969.
2012Rusznyák, A., D. M. Akob, S. Nietzsche, K. Eusterhues, K. U. Totsche, T. R. Neu, T. Frosch, J. Popp, R. Keiner, J. Geletneky, L. Katzschmann, E.-D. Schulze, and K. Küsel. 2012. Calcite biomineralization by bacterial isolates from the recently discovered pristine karstic Herrenberg Cave. Applied and Environmental Microbiology 78(4): 1157–1167.
2011Akob, D. M. and K. Küsel. 2011. Where microorganisms meet rocks in the Earth's Critical Zone. Biogeosciences 8: 3531-3543.
2011Akob, D. M., L. Kerkhof, K. Küsel, D. B. Watson, A. V. Palumbo, and J. E. Kostka. 2011. Linking specific heterotrophic bacterial populations to bioreduction of uranium and nitrate using stable isotope probing in contaminated subsurface sediments. Applied and Environmental Microbiology 77(22): 8197–8200.
2011Burkhardt, E.-M., S. Bischoff, D. M. Akob, G. Büchel, and K. Küsel. 2011. Heavy metal tolerance of Fe(III)-reducing microbial communities in a contaminated creek bank soil. Applied and Environmental Microbiology 77(9): 3132-3136.
2010Burkhardt, E.-M., D. M. Akob, S. Bischoff, J. Sitte, J. E. Kostka, D. Banerjee, A. C. Scheinost, K. Küsel. 2010. Impact of Biostimulated Redox Processes on Metal Dynamics in an Iron-rich Creek Soil of a former Uranium Mining Area. Environmental Science & Technology 44(1): 177-183.
2010Green, S. J., O. Prakash, T. M. Gihring, D. M. Akob, P. Jasrotia, P. M. Jardine, D. B. Watson, S. D. Brown, A. V. Palumbo and J. E. Kostka. 2010. Denitrifying bacteria from the terrestrial subsurface exposed to mixed waste contamination. Applied and Environmental Microbiology 76(10): 3244–3254.
2010Lu, S., S. Gischkat, M. Reiche, D. M. Akob, K. B. Hallberg, and K. Küsel. 2010. Ecophysiology of Fe-cycling Bacteria in Acidic Sediments. Applied and Environmental Microbiology 76 (24): 8174-8183.
2010Prakash, O., T. M. Gihring, D. D. Dalton, K.-J. Chin, S. J. Green, D. M. Akob, G. Wanger, and J. E. Kostka. 2010. Geobacter daltonii sp. nov., an iron(III)- and uranium(VI)-reducing bacterium isolated from the shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination. International Journal of Systematic and Evolutionary Microbiology 60(3): 546-553.
2010Sitte, J., D. M. Akob, C. Kaufmann, K. Finster, D. Banerjee, E.-M. Burkhardt, J. E. Kostka, A. Scheinost, G. Büchel and K. Küsel. 2010. Microbial Links between Sulfate Reduction and Metal Retention in Uranium and Heavy Metal-contaminated Soil. Applied and Environmental Microbiology 76(10): 3143–3152.
2010Vishnivetskaya, T. A., C. C. Brandt, A. S. Madden, M. S. Drake, J. E. Kostka, D. M. Akob, K. Küsel, and A. V. Palumbo. 2010. Microbial Community Changes in Response to Ethanol or Methanol Amendments for U(VI) Reduction. Applied and Environmental Microbiology 76(17): 5728-5735.
2008Akob, D. M., H. J. Mills, T. M Gihring, L. Kerkhof, J. W. Stucki, A. S. Anastacío, K.-J.Chin, K. Kusel, A. V. Palumbo, D. B. Watson, and J. E. Kostka. 2008. Functional Diversity and Electron Donor Dependence of Microbial Populations Capable of U(VI) Reduction in Radionuclide-Contaminated Subsurface Sediments. Applied and Environmental Microbiology 74(10): 3159-3170.
2008Blöthe, M., D. M. Akob, K. Walter, J.E. Kostka, H. L. Drake, and K. Küsel. 2008. Heterogeneity of Fe(III)-reducing microorganisms in coal-mining lake sediments caused by a pH gradient. Applied and Environmental Microbiology 74(4): 1019–1029.
2007Akob, D. M., H. J. Mills, & J. E. Kostka. 2007. Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiology Ecology 59:95-107.
2004Diaz, M. C., D. Akob, and C. S. Cary. 2004. Denaturing gradient gel electrophoresis of nitrifying microbes associated with tropical sponges. Proceedings of the 6th International Sponge Conference, Rapallo, Italy, 2002. Bollettino dei Musei e degli Istituti biologici dell'Università di Genova 68: 279–289.