Bergamaschi, B.A., Fleck, J.A., Downing, B.D., Boss, E., Pellerin, B., Ganju, N.K., Schoellhamer, D.H., Byington, A.A., Heim, W., Stephenson, M., and Fujii, R., 2012, Mercury dynamics in a San Francisco tidal wetland: assessing dynamics using in situ measurements, Estuaries and Coasts, 56, 1355-1371. PDF File

Bergamaschi, B.A., Fleck, J.A., Downing, B.D., Boss, E., Pellerin, B., Ganju, N.K., Schoellhamer, D.H., Heim, W., Stephenson, M., and Fujii, R., 2011, Methyl mercury dynamics in a tidal wetland quantified using in situ optical measurements, Limnology and Oceanography: Methods, 56, 1355-1371. PDF File

David, N., McKee, L.J., Black, F., Flegal, A.R., Conaway, C.H., Schoellhamer, D.H., and Ganju, N.K., 2009, Mercury concentrations and loads in a large river system tributary to San Francisco Bay, California, USA. Environmental Toxicology and Chemistry, 28, 2091-2100. PDF File

Downing, B.D., Boss, E., Bergamaschi, B.A., Fleck, J.A., Lionberger, M.A., Ganju, N.K., Schoellhamer, D.H., and Fujii, R., 2009, Quantifying fluxes and characterizing compositional changes of dissolved organic matter in aquatic systems in situ using combined acoustic and optical measurements. Limnology and Oceanography: Methods, 7, 119-131. PDF File

Ganju, N.K., 2011, A novel approach for direct estimation of fresh groundwater discharge to an estuary, Geophysical Research Letters, 38, L11402, doi:10.1029/2011GL047718. PDF File

Ganju, N.K., Dickhudt, P.J., Thomas, J.A., Borden, J., Sherwood, C.R., Montgomery, E.T., Twomey, E.R., and Martini, M.A., 2011, Summary of oceanographic and water-quality measurements in West Falmouth Harbor and Buzzards Bay, Massachusetts, 2009-2010, USGS Open-File Report 2011-1113. Link to report

Ganju, N.K., Jaffe, B.E., and Schoellhamer, D.H., 2011, Discontinuous hindcast simulations of estuarine bathymetric change: a case study from Suisun Bay, California. Estuarine, Coastal and Shelf Science, 93, 142-150. PDF File

Ganju, N.K, Knowles, N., and Schoellhamer, D.H., 2008, Temporal downscaling of decadal sediment load estimates to a daily interval for use in hindcast simulations. Journal of Hydrology, 349, 512-523. PDF File

Ganju, N.K., Lentz, S.J., Kirincich, A.R., and Farrar, J.T., 2011, Complex mean circulation over the Inner-Shelf south of Marthas Vineyard revealed by observations and a high resolution model, Journal of Geophysical Research, 116, C10036, ddoi:10.1029/2011JC007035. PDF File

Ganju, N.K., and Schoellhamer, D.H., 2006, Annual sediment flux estimates in a tidal strait using surrogate measurements. Estuarine, Coastal and Shelf Science, 69, 165-178. PDF File

Ganju, N.K., and Schoellhamer, D.H., 2008, Lateral variability of the estuarine turbidity maximum in a tidal strait. In: Kusuda, T., Yamanishi, H., Spearman, J., and Gailani, J.Z., Eds., Sediment and Ecohydraulics: INTERCOH 2005, Elsevier, Amsterdam, Netherlands, 339-355. PDF File

Ganju, N.K., and Schoellhamer, D.H., 2009, Calibration of an estuarine sediment transport model to sediment fluxes as an intermediate step for robust simulation of geomorphic evolution. Continental Shelf Research, 29, 148-158. PDF File

Ganju, N.K., and Schoellhamer, D.H., 2010, Decadal-timescale estuarine geomorphic change under future scenarios of climate and sediment supply. Estuaries and Coasts, 33, 15-29.PDF File

Ganju, N.K., Schoellhamer, D.H., and Bergamaschi, B.A, 2005, Suspended sediment fluxes in a tidal wetland: measurement, controlling factors, and error analysis. Estuaries 28(6), 812-822. PDF File

Ganju, N.K., Schoellhamer, D.H., and Jaffe, B.E., 2009, Hindcasting of decadal-timescale estuarine bathymetric change with a tidal-timescale model. Journal of Geophysical Research-Earth Surface, 114, F04019, doi:10.1029/2008JF001191. PDF File

Ganju, N.K., Schoellhamer, D.H., Murrell, M.C., Gartner, J.W., and Wright, S.A., 2006, Constancy of the relation between floc size and density in San Francisco Bay. In: Maa, J.P., Sanford, L.H., and Schoellhamer, D.H., Eds., Estuarine and Coastal Fine Sediment Dynamics - INTERCOH 2003, Elsevier, Amsterdam, Netherlands, p. 75-91. PDF File

Ganju, N.K., Schoellhamer, D.H., Warner, J.C., Barad, M.F., and Schladow, S.G., 2004, Tidal oscillation of sediment between a river and a bay: a conceptual model. Estuarine, Coastal and Shelf Science, 60(1), 81-90. PDF File

Ganju, N.K., and Sherwood, C.R., 2010, Effect of roughness formulation on the performance of a coupled wave, hydrodynamic, and sediment transport model. Ocean Modelling, 33, 299-313. PDF File

Gartner, J.W., and Ganju, N.K., 2007, Correcting acoustic Doppler current profiler discharge measurement bias from moving-bed conditions without global positioning during the 2004 Glen Canyon Dam controlled flood  on the Colorado River. Limnology and Oceanography: Methods, 5, 156-162. PDF File

McKee, L., Ganju, N.K., and Schoellhamer, D.H., 2006, Estimates of suspended sediment entering San Francisco Bay from the Sacramento and San Joaquin Delta, San Francisco Bay, California. Journal of Hydrology, 323, 335-352. PDF File

Schoellhamer, D.H., Ganju, N.K., Mineart, P.R., and Lionberger, M.A., 2008, Sensitivity and spin up times of cohesive sediment transport models used to simulate bathymetric change. In: Kusuda, T., Yamanishi, H., Spearman, J., and Gailani, J.Z., Eds., Sediment and Ecohydraulics: INTERCOH 2005, Elsevier, Amsterdam, Netherlands, 463-475. PDF File

Takekawa, J.Y., Woo, I., Athearn, N.D., Demers, S.A., Gardiner, R.J., Perry, W.M., Ganju, N.K., Shellenbarger, G.G., and Schoellhamer, D.H., 2010, Measuring sediment accretion in early tidal marsh restoration. Wetlands Ecology and Management, doi:10.1007/s11273-009-9170-6. PDF File